| Version 158 (modified by knpa, 14 years ago) (diff) |
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File structure and naming
A single site/logical group of flight lines/sortie should be contained in a single directory. If there are multiple sites from different projects, significantly different times of overflight or large time gaps, each should have its own directory.
The directory name should look like: PROJECTCODE-YYYY_JJJxx_SITENAME, e.g. GB07_07-2007_102a_Inverclyde, boresight-2007_198, etc.
There should be:
- no spaces, brackets or other Unix-upsetting characters in filenames
- execute permission removed from anything non-executable
- no empty directories? (need to think about this, maybe only do after checking it's not a stub for later data)
The structure under the project directory should look like:
| Top Level Dirs | 2nd Level Dirs | Example File Formats | Comments |
| 0532010.cfg | Config file used in current processing procedure | ||
| (eagle|hawk).mos | Eagle and Hawk mosaics of lev3 data | ||
| qsub_comm.sh (deprecated) | Script for submitting processing to gridnodes, used in earlier processing procedure | ||
| admin | Contains the flight logsheet and any miscellaneous information (readme's, copies of trac tickets, etc) | ||
| GB08_02-2009_078a_Delamere.(doc|txt|pdf) | Logsheet | ||
| GB08_02-2009_078a_Delamere.fpd | Flight planning document | ||
| delivery_readmes | Read_Me-20100809.(aux|log|tex) | Contains intermediate files used to create the ReadMe(s) | |
| applanix | Raw and processed Applanix navigation (raw files in applanix/raw/DCALM*, final processed data in applanix/*sbet or applanix/Proc/sbet*.out) | ||
| 2009078a.ppc | POSPac project file | ||
| auto_applanix (optional) | auto.bat | If navigation was processed using auto_applanix script then this dir will contain additional output from that script | |
| combine_seperation_bestguess_values | |||
| normal_first_convertbase.log | |||
| normal_first_convertflight.log | |||
| *.bat | |||
| *GNSS.cmb | |||
| *GNSS.dat | |||
| *GNSS_gnuplot | |||
| *GNSS.gnv | |||
| *GNSS.log | |||
| *GNSS.png | |||
| *GNSS.sum | |||
| base (deprecated) | ? | ||
| eo (possibly optional and often empty) | ? | ||
| extract | Plane gps data after extracted from raw files by applanix | ||
| dephem_*.dat | |||
| extract_*.log | |||
| gps_prim_*.dat | |||
| hwconf_*.out | |||
| iinr_*.out | |||
| iinz_*.out | |||
| imu_*.dat | |||
| mgps_*.epp | |||
| mgps_*.gpb | POSGNSS friendly file format | ||
| mgps_*.nov | |||
| mgps_*.sta | |||
| navclk_prim_*.dat | |||
| obs_prim_*.dat | |||
| rers_*.out | |||
| rinv_*.out | |||
| rmrs_*.out | |||
| rrms_*.out | |||
| rtstat_*.txt | |||
| tm_*.dat | |||
| vnav_*.out | |||
| vrms_*.out | |||
| *GNSS.dat | |||
| gps | Files associated with POSGNSS | ||
| *.cmb | Combined | ||
| *.fbv | |||
| *.fml | |||
| *.fss | |||
| *.fwd | |||
| *.gnv | POSGNSS Project file | ||
| *.his | |||
| *.rbv | |||
| *.rev | |||
| *.rml | |||
| *.rss | |||
| proc | ers_*.out | Processed applanix data | |
| idx_*.txt | |||
| inv_*.out | |||
| iin_*.out | |||
| mrs_*.out | |||
| rms_*.out | |||
| rmsg_*.out | |||
| sbet_*.out | |||
| sbet_2009078.out | |||
| smhkm_*.dat | |||
| smindex_*.dat | |||
| smout_*.out | |||
| smparm_*.txt | |||
| smphi_*.dat | |||
| smpx_*.dat | |||
| smreset_*.dat | |||
| smrms_*.out | |||
| smrmsg_*.out | |||
| raw | DCALM.001 | Raw gps data from plane | |
| atm (deprecated) | Raw ATM data files (az???LLL.JJJ, where ??? = disk id, LLL = 3 digit file number (000 typically contains navigation), JJJ = Julian day of capture), pre-2009 only | ||
| calibration | Typically a symlink to the appropriate calibration directory | ||
| casi (deprecated) | Raw CASI data files (ca??LLL.JJJ, where ?? = disk id, LLL = 3 digit file number, JJJ = Julian day of capture), pre-2008 only | ||
| delivery | Contains copies of data delivered to end users | ||
| (see below) | Structure described below | ||
| dem | Contains azgcorr compatible DEMs | ||
| eagle | Raw Eagle data files | ||
| VNIR078a-09-1.hdr | ENVI compatible header | ||
| VNIR078a-09-1.log | Log files | ||
| VNIR078a-09-1.nav | Navigation synchronisation data | ||
| VNIR078a-09-1.raw | Uncalibrated image data in .bil format | ||
| orignal_headers (optional) | VNIR078a-GB08-02.hdr-orig | If the header files have been altered for any reason, the originals should be in here | |
| grid_logs (deprecated) | Logs from hyperspectral script runs on gridnode (one log per sct run) | ||
| hawk | Raw Hawk data files (.raw = image data, .hdr = ENVI compatible header, .nav = navigation synchronisation data) | ||
| dataCube.raw | |||
| SWIR078a-09-1.hdr | ENVI compatible header | ||
| SWIR078a-09-1.log | Log files | ||
| SWIR078a-09-1.nav | Navigation synchronisation data | ||
| SWIR078a-09-1.raw | Uncalibrated image data in .bil format | ||
| original_headers (optional) | SWIR078a-GB08-02.hdr-orig | If the header files have been altered for any reason, the originals should be in here | |
| leica | Leica LIDAR data | ||
| (see below) | Structure described below | ||
| lev1 | (see below) | Processed hyperspectral level 1 data (should be empty if data has been moved into delivery) | |
| lev3 | Processed hyperspectral level 3 data | ||
| e078a013b_n_sct-0.03_p_gpt0.0.tif | |||
| lidar (deprecated) | Raw and processed ULM LIDAR (raw LIDAR looks like "surveyXXX.range", processed is typically in a strips/ directory) | ||
| logs | *.logs | Logs from hyperspectral script runs on gridnode (one log per flightline) | |
| photos (deprecated) | RC10 scanned aerial photographs | ||
| rinex | GPS basestation data appropriate to the site | ||
| oxfr154g30.09n | |||
| oxfr154g30.09o | |||
| oxfr154g30.epp | |||
| oxfr154g30.gpb | POSGNSS friendly file format | ||
| oxfr154g30.sta | Text file with info about basestation | ||
| runa (deprecated) | ATM processing scripts | ||
| runc (deprecated) | CASI processing scripts | ||
| rune (deprecated) | Eagle processing scripts | ||
| runh (deprecated) | Hawk processing scripts | ||
| tabi | Raw TABI data | ||
| vectors (deprecated) | (2007/8 only) - symlink to appropriate vectors |
The lev1 and lev3 data filenames are structured as "sdddfnn1b.{hdf|tif}", where:
- s is the sensor id (a=ATM, c=CASI, e=Eagle, h=Hawk)
- ddd is the Julian day of the data acquisition
- f distinguishes between multiple flights on the same day (“a” being the first flight)
- nn is the flight line number (note this is not necessarily the same as the flight line identifier as specified by the PI - these numbers are the number of the flight in order of when it was taken, as on the logsheet)
Leica LIDAR data
| subdir of "leica" | 2nd level dir | Files | Comments |
| aux_files | Reg file used, any logs produced, intensity mosaics, boresight values | ||
| lidar.mos | ENVI mosaic of lidar lines intensity | ||
| lidar_mos.hdr | |||
| 2009078a.reg | |||
| *.tif | |||
| *.txt | |||
| intensity_images (optional) | Files created when making the intensity screenshots for deliveries | ||
| LDR091026_060148_1.jpg | |||
| LDR091026_060148_1.tif | |||
| ipas | |||
| *.gpj | IPAS Project Files | ||
| base | Base station data | ||
| oxfr154g30.09n | |||
| oxfr154g30.09o | |||
| oxfr154g30.epp | |||
| oxfr154g30.gpb | Gravnav friendly file format | ||
| oxfr154g30.sta | Text file with info about basestation | ||
| eo | |||
| extract | |||
| *.epp | |||
| *.EVT | |||
| *_extractLog.txt | |||
| *.fbv | |||
| *.rbv | |||
| *.gpb | Grafnav friendly file format | ||
| *.GPS | |||
| *.IMU | |||
| *.RNV | |||
| *.RTG | |||
| *_RTMsg.txt | |||
| *.sta | |||
| *.SUP | |||
| *.tm | |||
| gps | |||
| *.cfg | Grafnav project file | ||
| *.fml | |||
| *.fss | |||
| *.fwd | |||
| *.his | |||
| *.lat | grafnav final output which is used by IPAS (text version) | ||
| *.lat.bin | grafnav final output which is used by IPAS | ||
| *.rev | |||
| *.rml | |||
| *.rss | |||
| proc | Processed GPS/IMU data (SBETs) | ||
| sbet_20091025_from_sol.out | sbet created from sol file | ||
| raw | 20090319_111251.001 | Raw GPS/IMU data | |
| logs | *.csv | Contains the flight/ops log files | |
| *.mdb | |||
| *.txt | |||
| *.xml | |||
| proc_laser | Contains the finalised processed LAS files | ||
| LDR091026_060148_1.LAS | |||
| pplog_20100226_122027.txt | |||
| stats.txt | |||
| raw_laser (deprecated) | Contains the raw laser data | ||
| 090601_111411 | |||
| LDR090601_111411_0000000001.scn | |||
| RawLaser | Contains the raw laser data (and works with FW processing) | ||
| 090601_111411 | Contains raw laser for one contiguous recording | ||
| LDR090601_111411_0000000001.scn | Raw LIDAR scan files | ||
| RawWFD | Raw waveform data | ||
| 100706_094620 | |||
| WFD100706_094620_0000000001A.LWV | |||
| rcd | |||
| raw_images | |||
| logs | |||
| camera_delivery.log | |||
| 090803-100306ImageEvents(1|2).csv | |||
| 090803-145404PhotoId(1|2).csv | |||
| 090803-100306SensorLog.csv | |||
| 090803-145404SensorStat(1|2).csv | |||
| webcam |
Delivered data
As data may be delivered multiple times (in the event of a problem requiring reprocessing) or in stages (if particular sensors are completed first and others look like they'll be delayed), we take copies of any data sent to the end user for future reference (e.g. in support). The lev1/ and lev3/ directories will typically contain the latest processed version.
Delivered data is stored delivery/YYYYMMDD/PROJECTCODE/, where YYYYMMDD is the date the delivery was created. The directory structure of a delivery looks like:
Hyperspectral deliveries
| Dirs | Example Files | Comments |
| Read_Me-20100202.(txt|pdf) | Instructions for use and description of dataset, plus any problems encountered. | |
| bin (deprecated) | Instructions for downloading azgcorr | |
| dem (optional) | A dem to help the user with processing to lev3. Can be from their lidar data, from SRTM or a combination (not from NEXTMAP data). | |
| doc | azgcorr manual and other documentation | |
| azgcorr_geocorrection.pdf | ||
| azgcorr_manual.pdf | ||
| data_quality-20100525.pdf | ||
| README-manual_outdated.txt | ||
| lev1 | Processed level 1 data | |
| (e|h)078a031b.bil | Level 1 image data | |
| (e|h)078a031b.bil.hdr | Header file for image data | |
| (e|h)078a031b.hdf | Metadata for image | |
| logsheet | Copy of pdf version of logsheet | |
| FW10_01-2010_187_Dennys_wood.pdf | ||
| misc (optional) | Any additional files needed for level 3 processing (e.g. OS National Grid correction file, geoid-spheroid separation grid file, etc) | |
| osgb02 | ||
| sphsep15lx.grd | ||
| screenshots | Images of the level 3 output we managed when testing the data | |
| (e|h)078a013b.jpg | Individual line screenshot | |
| (eagle|hawk)_mosaic.jpg | Screenshot of all level 3 data | |
| (eagle|hawk_mosaic_with_vectors.jpg | Screenshot of all level 3 data with overlaid vectors |
The image filenames in the lev1 directory are structured as sdddfnnLL.hdf, where:
- s is the sensor id (a=ATM, c=CASI, e=Eagle, h=Hawk)
- ddd is the Julian day of the data acquisition
- f distinguishes between multiple flights on the same day ("a" being the first flight)
- nn is the flight line number
- LL is the processing level
- 1b = ungeocorrected data
- 3a = geocorrected without a DEM
- 3b = geocorrected with a DEM
Lidar deliveries
| Dirs | Sub Dirs | Example Files | Comments |
| COPYRIGHT.txt | Copyright notice | ||
| Read_Me-20100202.(txt|pdf) | Instructions for use and description of dataset, plus any problems encountered | ||
| ascii_laser | Classified ascii lidar point clouds | ||
| LDR-GB08_02-200907801.txt | |||
| bin | Latest versions of the pt_cloud_filter for linux and windows | ||
| dem | GB08_19-2010-254b.dem | DEM created from the lidar data | |
| discrete_laser (FW only) | |||
| ascii_files | |||
| LDR-FW10_02-201010101.txt | |||
| LAS_files | |||
| LDR-FW10_02-201010101.LAS | |||
| doc | Lidar quality report and processing information | ||
| fw_extractions (FW only) | Full waveform area extractions | ||
| FW10_02-2010-101_extractions.jpg | |||
| FW10_02-2010-101_extractions.txt | |||
| area1 | |||
| waveform_42437_649348_only.txt ? | |||
| fw_laser (FW only) | Full waveform laser data | ||
| LDR-FW-FW10_02-201009801.LAS ? | |||
| logsheet | Logsheet as stored in admin/ above | ||
| screenshots | Images of the dem and intensity mosaic | ||
| GB08_19-2010-254b_intensity.jpg | |||
| GB08_19-2010-254b_intensity_vectors.jpg | |||
| GB08_19-2010-254b_dem.jpg |
Photographic deliveries
| Dirs | Example Files | Comments |
| GB08_02-2009_078a_Delamere.kml | Google earth file containing eagle/hawk/photo positions | |
| Read_Me-20100202.(txt|pdf) | Instructions for use and description of dataset, plus any problems encountered | |
| doc | Camera data quality report | |
| eventfile | CSV file containing pos/att info per photograph event (may be missing if camera crashed) | |
| photographs | Tagged tif files of each photograph in area of interest | |
| thumbnails | JPEG thumbnails of each photograph in area of interest |
Rogue File Types
Anyone know what these are?
./being_archived/IPY09_11-2009_215_Helheim/leica/ipas/extract/2009_215.fsl
./being_archived/IPY09_11-2009_215_Helheim/leica/ipas/extract/2009_215.rsl
GB08_06-2009_182_Bleaklow/leica/logs/RTC090701_141724.las